PlantPromoterDB promoter information of AT5G55730
Summary of Gene (AT5G55730)
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Overview
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Focused view (chromosome 5: 22561392-22560193)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G55730 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G55730
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | - | 22560715 | -323 |
| TSS peak | A | 17 | - | 22560455 | -63 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 22560464 | -72 |
| TSS clone | A | clone | - | 22560460 | -68 |
| TSS clone | A | clone | - | 22560454 | -62 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCCTATAT | - | 22560751 | 22560758 | -359 | -366 |
| Y Patch | CTCTTCTTC | - | 22560444 | 22560452 | -52 | -60 |
| Y Patch | CCTTCTTCTTC | - | 22560469 | 22560479 | -77 | -87 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTAATTA | - | 22560516 | 22560523 | -124 | -131 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
| REG | AAAAGCCCATAA | - | 22560587 | 22560598 | -195 | -206 | |||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG477 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATATGGGC | - | 22560828 | 22560835 | -436 | -443 | |||
| AtREG432 | ATATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||