PlantPromoterDB promoter information of AT5G55910.1
Summary of Gene (AT5G55910.1)
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Overview
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Focused view (chromosome 5: 22642634-22641435)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G55910.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G55910.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 22642262 | -628 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 22642353 | -719 |
| TSS clone | T | clone | - | 22642289 | -655 |
| TSS clone | G | clone | - | 22642265 | -631 |
| TSS clone | T | clone | - | 22642261 | -627 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTCTCTCTCT | - | 22642237 | 22642251 | -603 | -617 |
| Y Patch | CTCTCTCTCCCTCTCTCT | - | 22642295 | 22642312 | -661 | -678 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTGACCC | - | 22642378 | 22642385 | -744 | -751 | |||
| AtREG592 | TTTGACCC | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | AAAAAGCC | - | 22642524 | 22642531 | -890 | -897 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||