Summary of Gene (AT5G55920.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G55920.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | - | 22649447 | -64 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | - | 22642262 | AT5G55910.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 22642353 | AT5G55910.1 |
TSS clone | T | clone | - | 22642289 | AT5G55910.1 |
TSS clone | G | clone | - | 22642265 | AT5G55910.1 |
TSS clone | T | clone | - | 22642261 | AT5G55910.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTCTCTCTCT | - | 22642237 | 22642251 | AT5G55910.1 | |
Y Patch | CTCTCTCTCCCTCTCTCT | - | 22642295 | 22642312 | AT5G55910.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTTGACCC | - | 22642378 | 22642385 | AT5G55910.1 | ||||
AtREG592 | TTTGACCC | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  | ||||
REG | AAAAAGCC | - | 22642524 | 22642531 | AT5G55910.1 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   |