PlantPromoterDB promoter information of AT5G55930
Summary of Gene (AT5G55930)
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Overview
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Focused view (chromosome 5: 22641938-22643137)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G55930 5'->3' (+) Promoter sequence AT5G55910.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G55930
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | + | 22652826 | -162 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 22652825 | -163 |
| TSS clone | A | clone | + | 22652826 | -162 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTCTATATATG | + | 22652788 | 22652798 | -200 | -190 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTAACGG | + | 22652671 | 22652678 | -317 | -310 | |||
| AtREG610 | TTTAACGG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | - | 22642262 | AT5G55910.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 22642353 | AT5G55910.1 |
| TSS clone | T | clone | - | 22642289 | AT5G55910.1 |
| TSS clone | G | clone | - | 22642265 | AT5G55910.1 |
| TSS clone | T | clone | - | 22642261 | AT5G55910.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTCTCTCTCT | - | 22642237 | 22642251 | AT5G55910.1 | |
| Y Patch | CTCTCTCTCCCTCTCTCT | - | 22642295 | 22642312 | AT5G55910.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTTGACCC | - | 22642378 | 22642385 | AT5G55910.1 | ||||
| AtREG592 | TTTGACCC | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | AAAAAGCC | - | 22642524 | 22642531 | AT5G55910.1 | ||||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||