PlantPromoterDB promoter information of AT5G55930
Summary of Gene (AT5G55930)
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Overview
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Focused view (chromosome 5: 22661538-22662737)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G55930 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G55930
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | + | 22652826 | -162 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 22652825 | -163 |
| TSS clone | A | clone | + | 22652826 | -162 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTCTATATATG | + | 22652788 | 22652798 | -200 | -190 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTAACGG | + | 22652671 | 22652678 | -317 | -310 | |||
| AtREG610 | TTTAACGG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 2 | + | 22662637 | AT5G55960.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 22662576 | AT5G55960.1 |
| TSS clone | T | clone | + | 22662719 | AT5G55960.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTCTCT | + | 22662608 | 22662618 | AT5G55960.1 | |
| Y Patch | TTTCTTCTT | + | 22662620 | 22662628 | AT5G55960.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGTCATTT | + | 22662477 | 22662484 | AT5G55960.1 | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||