PlantPromoterDB promoter information of AT5G55930.1
Summary of Gene (AT5G55930.1)
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Overview
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Focused view (chromosome 5: 22656938-22658137)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G55930.1 5'->3' (+) Promoter sequence AT5G55940.1
AT5G55950.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G55930.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | + | 22652826 | -162 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 22652825 | -163 |
| TSS clone | A | clone | + | 22652826 | -162 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTCTATATATG | + | 22652788 | 22652798 | -200 | -190 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTTAACGG | + | 22652671 | 22652678 | -317 | -310 | |||
| AtREG610 | TTTAACGG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 23 | - | 22657960 | AT5G55940.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 22658050 | AT5G55940.1 |
| TSS clone | G | clone | - | 22658048 | AT5G55940.1 |
| TSS clone | C | clone | - | 22658014 | AT5G55940.1 |
| TSS clone | A | clone | - | 22657959 | AT5G55940.1 |
| TSS clone | G | clone | - | 22657949 | AT5G55940.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TGACCCGAACCCGGTTTAG | - | 22658017 | 22658035 | AT5G55940.1 | ||||
| AtREG617 | TGACCCGA | PPDB Motif | PLACE Motif | ||||||
| AtREG597 | GACCCGAA | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG516 | AACCCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG455 | ACCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTGACTTT | - | 22658112 | 22658119 | AT5G55940.1 | ||||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||