Summary of Gene (AT5G56980)
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Overview |
Genome position
from initiation codon AT5G57000.2 TSS from cDNA TSS information AT5G56980 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 4 | - | 23058054 | -341 |
TSS peak | G | 8 | - | 23057743 | -30 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 23057744 | -31 |
TSS clone | A | clone | - | 23057742 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | AATATAAATATA | - | 23057768 | 23057779 | -55 | -66 |
Y Patch | TCTCCTTC | - | 23057745 | 23057752 | -32 | -39 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACGTGCG | - | 23057938 | 23057945 | -225 | -232 | |||
AtREG541 | CACGTGCG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |