PlantPromoterDB promoter information of AT5G57110.1
Summary of Gene (AT5G57110.1)
|
Overview
|
Focused view (chromosome 5: 23117857-23116658)
|
Genome position
from initiation codon TSS from cDNA TSS information AT5G57110.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G57110.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 23117536 | -679 |
| TSS peak | A | 8 | - | 23116900 | -43 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 23117563 | -706 |
| TSS clone | C | clone | - | 23117548 | -691 |
| TSS clone | T | clone | - | 23116902 | -45 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTATATATT | - | 23117573 | 23117581 | -716 | -724 |
| Y Patch | TTTCTTCTT | - | 23116877 | 23116885 | -20 | -28 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGTGGT | - | 23116975 | 23116982 | -118 | -125 | |||
| AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ACCCTAGA | - | 23117583 | 23117590 | -726 | -733 | |||
| AtREG658 | ACCCTAGA | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | ATAACCGGCCCAAG | - | 23117614 | 23117627 | -757 | -770 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG457 | CCGGCCCA | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | |||
| AtREG414 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG505 | GGCCCAAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | AGCGCGTGCCACGTAG | - | 23117658 | 23117673 | -801 | -816 | |||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG444 | GTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG495 | CCACGTAG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||