PlantPromoterDB promoter information of AT5G57350.1
Summary of Gene (AT5G57350.1)
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Overview
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Focused view (chromosome 5: 23241481-23240282)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G57350.1 5'->3' (-) Promoter sequence AT5G57360.1
AT5G57360.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G57350.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | - | 23236566 | -185 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 23236562 | -181 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATATAAATA | - | 23236602 | 23236611 | -221 | -230 |
| Y Patch | CTCTCTTT | - | 23236554 | 23236561 | -173 | -180 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTAAACCGA | - | 23236632 | 23236640 | -251 | -259 | |||
| AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 23241431 | AT5G57360.1, AT5G57360.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 23241427 | AT5G57360.1, AT5G57360.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTCTCTCTCTCTCTCTC | + | 23241457 | 23241477 | AT5G57360.1, AT5G57360.2 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAGTCAA | + | 23241212 | 23241219 | AT5G57360.1, AT5G57360.2 | ||||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | TGACCCGAC | + | 23241344 | 23241352 | AT5G57360.1, AT5G57360.2 | ||||
| AtREG617 | TGACCCGA | PPDB Motif | PLACE Motif | ||||||
| AtREG390 | GACCCGAC | PPDB Motif | CCGAC, GGGACCC | PLACE Motif | CCGAC | ||||
| REG | CGGACCCG | + | 23241362 | 23241369 | AT5G57360.1, AT5G57360.2 | ||||
| AtREG491 | CGGACCCG | PPDB Motif | PLACE Motif | ||||||
| REG | CCGACCCG | + | 23241378 | 23241385 | AT5G57360.1, AT5G57360.2 | ||||
| AtREG375 | CCGACCCG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||