PlantPromoterDB promoter information of AT5G57560
Summary of Gene (AT5G57560)
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Overview
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Focused view (chromosome 5: 23309235-23308036)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G57560 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G57560
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 77 | - | 23308281 | -46 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 23308282 | -47 |
| TSS clone | A | clone | - | 23308281 | -46 |
| TSS clone | C | clone | - | 23308280 | -45 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ACTATATATACA | - | 23308306 | 23308317 | -71 | -82 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATGGCCCAAT | - | 23308411 | 23308420 | -176 | -185 | |||
| AtREG437 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | GGCTTTTA | - | 23308428 | 23308435 | -193 | -200 | |||
| AtREG549 | GGCTTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | AACCGCGTGA | - | 23308462 | 23308471 | -227 | -236 | |||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG502 | CCGCGTGA | Drought | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||