PlantPromoterDB promoter information of AT5G58070
Summary of Gene (AT5G58070)
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Overview
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Focused view (chromosome 5: 23502156-23500957)
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Genome position
from initiation codon AT5G58080.1 TSS from cDNA TSS information AT5G58070 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G58070
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 13 | - | 23501192 | -36 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 23501209 | -53 |
| TSS clone | C | clone | - | 23501208 | -52 |
| TSS clone | C | clone | - | 23501205 | -49 |
| TSS clone | A | clone | - | 23501204 | -48 |
| TSS clone | A | clone | - | 23501203 | -47 |
| TSS clone | A | clone | - | 23501191 | -35 |
| TSS clone | A | clone | - | 23501171 | -15 |
| TSS clone | A | clone | - | 23501162 | -6 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCTT | - | 23501218 | 23501226 | -62 | -70 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTCCACGTGGCAT | - | 23501287 | 23501299 | -131 | -143 | |||
| AtREG627 | TTCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | TATGGCCCATTG | - | 23501403 | 23501414 | -247 | -258 | |||
| AtREG479 | TATGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG437 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG551 | GCCCATTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGGCCTAG | - | 23501450 | 23501457 | -294 | -301 | |||
| AtREG475 | GGGCCTAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||