PlantPromoterDB promoter information of AT5G58090.1

Summary of Gene (AT5G58090.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G58090 TAIR NCBI
Gene model	AT5G58090.1
Description	glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G31140.1); Has 1739 Blast hits to 1690 proteins in 137 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 53; Plants - 1666; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 23508193-23506994)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G58090.1 5'->3' (-) Promoter sequence AT5G58100.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G58090.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 18 - 23507279 -86

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	18	-	23507279	-86

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 23507311 -118

TSS clone C clone - 23507310 -117

TSS clone C clone - 23507278 -85

TSS clone A clone - 23507272 -79

TSS clone A clone - 23507271 -78

TSS clone T clone - 23507248 -55

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	23507311	-118
TSS clone	`C`	clone	-	23507310	-117
TSS clone	`C`	clone	-	23507278	-85
TSS clone	`A`	clone	-	23507272	-79
TSS clone	`A`	clone	-	23507271	-78
TSS clone	`T`	clone	-	23507248	-55

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TACGTGTCAT - 23507365 23507374 -172 -181

AtREG557 TACGTGTC   ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG389 ACGTGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG438   CGTGTCAT ABA PPDB Motif PLACE Motif

REG AAAAGCCCAC - 23507449 23507458 -256 -265

AtREG409 AAAAGCCC   PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG518   AAGCCCAC PPDB Motif GCCCA PLACE Motif TGGGCY

REG ATATGGGCCTGT - 23507464 23507475 -271 -282

AtREG432 ATATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG364 TATGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG370    TGGGCCTG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG433     GGGCCTGT PPDB Motif GCCCA PLACE Motif GGGCC

REG AAAAGCCCAC - 23507540 23507549 -347 -356

AtREG409 AAAAGCCC   PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG518   AAGCCCAC PPDB Motif GCCCA PLACE Motif TGGGCY

REG AAATGGGCTTG - 23507556 23507566 -363 -373

AtREG386 AAATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG372 AATGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG525    TGGGCTTG PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TACGTGTCAT`		-	23507365	23507374	-172	-181
	AtREG557	`TACGTGTC`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG389	`ACGTGTCA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG438	`CGTGTCAT`	ABA	PPDB Motif		PLACE Motif
REG	`AAAAGCCCAC`		-	23507449	23507458	-256	-265
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG518	`AAGCCCAC`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`ATATGGGCCTGT`		-	23507464	23507475	-271	-282
	AtREG432	`ATATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG364	`TATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG370	`TGGGCCTG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG433	`GGGCCTGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`AAAAGCCCAC`		-	23507540	23507549	-347	-356
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG518	`AAGCCCAC`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`AAATGGGCTTG`		-	23507556	23507566	-363	-373
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG525	`TGGGCTTG`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 + 23507714 AT5G58100.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	+	23507714	AT5G58100.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 23507708 AT5G58100.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	23507708	AT5G58100.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGGCTTTT + 23507449 23507458 AT5G58100.1

AtREG518 GTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376 TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409   GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG ACAGGCCCATAT + 23507464 23507475 AT5G58100.1

AtREG433 ACAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG370 CAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364    GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432     GCCCATAT PPDB Motif GCCCA PLACE Motif

REG GTGGGCTTTT + 23507540 23507549 AT5G58100.1

AtREG518 GTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376 TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409   GGGCTTTT PPDB Motif GCCCA PLACE Motif

REG CAAGCCCATTT + 23507556 23507566 AT5G58100.1

AtREG525 CAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372   AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386    GCCCATTT PPDB Motif GCCCA PLACE Motif