Summary of Gene (AT5G58230.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G58230.1 5'->3' (+) Promoter sequence AT5G58220.1
AT5G58220.2 AT5G58220.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 23556040 | -72 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 23556032 | -80 |
TSS clone | G | clone | + | 23556033 | -79 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTCTATAT | + | 23555996 | 23556004 | -116 | -108 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAATTGGGCCTTTT | + | 23555921 | 23555934 | -191 | -178 | |||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG418 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGCTTTT | + | 23555942 | 23555949 | -170 | -163 | |||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAATGGGCCTTTT | + | 23555953 | 23555965 | -159 | -147 | |||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | - | 23555883 | AT5G58220.1, AT5G58220.2, AT5G58220.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 23555881 | AT5G58220.1, AT5G58220.2, AT5G58220.3 |
TSS clone | G | clone | - | 23555879 | AT5G58220.1, AT5G58220.2, AT5G58220.3 |
TSS clone | G | clone | - | 23555878 | AT5G58220.1, AT5G58220.2, AT5G58220.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAAGGCCCAAT | - | 23555923 | 23555934 | AT5G58220.1, AT5G58220.2, AT5G58220.3 | ||||
AtREG459 | AAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | AAAAGCCC | - | 23555942 | 23555949 | AT5G58220.1, AT5G58220.2, AT5G58220.3 | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAAGGCCCATTT | - | 23555953 | 23555965 | AT5G58220.1, AT5G58220.2, AT5G58220.3 | ||||
AtREG459 | AAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   |