PlantPromoterDB promoter information of AT5G58290.1
Summary of Gene (AT5G58290.1)
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Overview
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Focused view (chromosome 5: 23568155-23569354)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G58290.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G58290.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 23569081 | -74 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 23569049 | -106 |
| TSS clone | T | clone | + | 23569052 | -103 |
| TSS clone | T | clone | + | 23569062 | -93 |
| TSS clone | A | clone | + | 23569071 | -84 |
| TSS clone | C | clone | + | 23569087 | -68 |
| TSS clone | A | clone | + | 23569133 | -22 |
| TSS clone | A | clone | + | 23569139 | -16 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTTCC | + | 23569121 | 23569129 | -34 | -26 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGTTCGG | + | 23568830 | 23568837 | -325 | -318 | |||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
| REG | GGGCTATT | + | 23568958 | 23568965 | -197 | -190 | |||
| AtREG584 | GGGCTATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACTGGGCCTTAC | + | 23568976 | 23568987 | -179 | -168 | |||
| AtREG384 | ACTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG410 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG351 | GGGCCTTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG530 | GGCCTTAC | PPDB Motif | PLACE Motif | ||||||
| REG | AAAAGGCCCATTTA | + | 23568994 | 23569007 | -161 | -148 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG359 | AAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||