Summary of Gene (AT5G59540)
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Overview |
Genome position
from initiation codon AT5G59560.2 TSS from cDNA TSS information AT5G59540 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | - | 23997590 | -14 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 23997590 | -14 |
TSS clone | G | clone | - | 23997589 | -13 |
TSS clone | G | clone | - | 23997588 | -12 |
TSS clone | G | clone | - | 23997585 | -9 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCATATATAG | - | 23997613 | 23997622 | -37 | -46 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGACCCAC | - | 23997690 | 23997697 | -114 | -121 | |||
AtREG523 | GGACCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 24001915 | AT5G59560.1, AT5G59560.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCCTCCT | - | 24001810 | 24001819 | AT5G59560.1, AT5G59560.2 | |
Y Patch | CTTCCTCT | - | 24001843 | 24001850 | AT5G59560.1, AT5G59560.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGCCCAATA | - | 24001975 | 24001983 | AT5G59560.1, AT5G59560.2 | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTATTGGGCCGTA | - | 24002007 | 24002019 | AT5G59560.1, AT5G59560.2 | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG414 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG499 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |