Summary of Gene (AT5G59690)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT5G59690.1 TSS from cDNA TSS information AT5G59690 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 61 | + | 24051579 | -70 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 24051573 | -76 |
TSS clone | A | clone | + | 24051574 | -75 |
TSS clone | C | clone | + | 24051577 | -72 |
TSS clone | T | clone | + | 24051578 | -71 |
TSS clone | C | clone | + | 24051580 | -69 |
TSS clone | A | clone | + | 24051627 | -22 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGCCTATAAAAA | + | 24051539 | 24051550 | -110 | -99 |
Y Patch | TCTTTCTC | + | 24051561 | 24051568 | -88 | -81 |
Y Patch | TTCTTCTTCTTCT | + | 24051590 | 24051602 | -59 | -47 |
Y Patch | TTTCTCTC | + | 24051614 | 24051621 | -35 | -28 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCACGCGG | + | 24051400 | 24051407 | -249 | -242 | |||
AtREG502 | TCACGCGG | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | ACGGTTTAT | + | 24051442 | 24051450 | -207 | -199 | |||
AtREG652 | ACGGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |