PlantPromoterDB promoter information of AT5G59730.1
Summary of Gene (AT5G59730.1)
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Overview
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Focused view (chromosome 5: 24067004-24065805)
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Genome position
from initiation codon AT5G59732.1 TSS from cDNA TSS information AT5G59730.1 5'->3' (-) Promoter sequence AT5G59732
AT5G59732.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G59730.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | - | 24066072 | -68 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 24066170 | -166 |
| TSS clone | A | clone | - | 24066165 | -161 |
| TSS clone | T | clone | - | 24066164 | -160 |
| TSS clone | C | clone | - | 24066160 | -156 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTTCTTCTTC | - | 24066058 | 24066068 | -54 | -64 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAAGCCGTCGTTTC | - | 24066205 | 24066220 | -201 | -216 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
| REG | TTGACTTT | - | 24066325 | 24066332 | -321 | -328 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||