Summary of Gene (AT5G59750)
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Overview |
Genome position
from initiation codon AT5G59732.1 TSS from cDNA TSS information AT5G59750 5'->3' (+) Promoter sequence AT5G59730.1
AT5G59730.2 AT5G59732.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 2 | + | 24073323 | -74 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 24073238 | -159 |
TSS clone | A | clone | + | 24073310 | -87 |
TSS clone | G | clone | + | 24073311 | -86 |
TSS clone | G | clone | + | 24073323 | -74 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TATAGGCCACGTCAGC | + | 24073093 | 24073108 | -304 | -289 | |||
AtREG487 | TATAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG388 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | GTGGCCCATG | + | 24073186 | 24073195 | -211 | -202 | |||
AtREG445 | GTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GCCAC, GGGCC, TGGGCY  | ||||
AtREG490 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG504 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 17 | - | 24066072 | AT5G59730.1, AT5G59730.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 24066170 | AT5G59730.1, AT5G59730.2 |
TSS clone | A | clone | - | 24066165 | AT5G59730.1, AT5G59730.2 |
TSS clone | T | clone | - | 24066164 | AT5G59730.1, AT5G59730.2 |
TSS clone | C | clone | - | 24066160 | AT5G59730.1, AT5G59730.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTTCTTCTTC | - | 24066058 | 24066068 | AT5G59730.1, AT5G59730.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAAAGCCGTCGTTTC | - | 24066205 | 24066220 | AT5G59730.1, AT5G59730.2 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG576 | GTCGTTTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTGACTTT | - | 24066325 | 24066332 | AT5G59730.1, AT5G59730.2 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  |