Summary of Gene (AT5G59845)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G59845 5'->3' (+) Promoter sequence AT5G59850.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 24111327 | -116 |
TSS clone peak | A | clone | + | 24111334 | -109 |
TSS clone | A | clone | + | 24111413 | -30 |
TSS clone | T | clone | + | 24111414 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 33 | - | 24113605 | AT5G59850.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 24113610 | AT5G59850.1 |
TSS clone | G | clone | - | 24113605 | AT5G59850.1 |
TSS clone | T | clone | - | 24113604 | AT5G59850.1 |
TSS clone | G | clone | - | 24113598 | AT5G59850.1 |
TSS clone | T | clone | - | 24113571 | AT5G59850.1 |
TSS clone | C | clone | - | 24113570 | AT5G59850.1 |
TSS clone | C | clone | - | 24113564 | AT5G59850.1 |
TSS clone | G | clone | - | 24113094 | AT5G59850.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAGGCCCAAAATAAAGCCCATTAT | - | 24113680 | 24113704 | AT5G59850.1 | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG529 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG601 | ATAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG546 | CCCATTAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAACGACG | - | 24113756 | 24113764 | AT5G59850.1 | ||||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   |