PlantPromoterDB promoter information of AT5G59845

Summary of Gene (AT5G59845)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G59845 TAIR NCBI
Gene model	AT5G59845
Description	gibberellin-regulated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 250 Blast hits to 250 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

#

Overview

Focused view (chromosome 5: 24112693-24113892)

`Genome position from initiation codon` `AT5G59860.1 TSS from cDNA TSS information AT5G59845 5'->3' (+) Promoter sequence AT5G59850.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G59845

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 24111327 -116

TSS clone peak A clone + 24111334 -109

TSS clone A clone + 24111413 -30

TSS clone T clone + 24111414 -29

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	24111327	-116
TSS clone peak	`A`	clone	+	24111334	-109
TSS clone	`A`	clone	+	24111413	-30
TSS clone	`T`	clone	+	24111414	-29

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 33 - 24113605 AT5G59850.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	33	-	24113605	AT5G59850.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 24113610 AT5G59850.1

TSS clone G clone - 24113605 AT5G59850.1

TSS clone T clone - 24113604 AT5G59850.1

TSS clone G clone - 24113598 AT5G59850.1

TSS clone T clone - 24113571 AT5G59850.1

TSS clone C clone - 24113570 AT5G59850.1

TSS clone C clone - 24113564 AT5G59850.1

TSS clone G clone - 24113094 AT5G59850.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	24113610	AT5G59850.1
TSS clone	`G`	clone	-	24113605	AT5G59850.1
TSS clone	`T`	clone	-	24113604	AT5G59850.1
TSS clone	`G`	clone	-	24113598	AT5G59850.1
TSS clone	`T`	clone	-	24113571	AT5G59850.1
TSS clone	`C`	clone	-	24113570	AT5G59850.1
TSS clone	`C`	clone	-	24113564	AT5G59850.1
TSS clone	`G`	clone	-	24113094	AT5G59850.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAGGCCCAAAATAAAGCCCATTAT - 24113680 24113704 AT5G59850.1

AtREG359 AAAGGCCC                  PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353 AAGGCCCA                 PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373    GGCCCAAA               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG529     GCCCAAAA              PPDB Motif GCCCA PLACE Motif

AtREG601            ATAAAGCC       PPDB Motif PLACE Motif

AtREG365             TAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376              AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378               AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372                AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357                 GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546                  CCCATTAT PPDB Motif PLACE Motif

REG TAAACGACG - 24113756 24113764 AT5G59850.1

AtREG565 TAAACGAC PPDB Motif PLACE Motif

AtREG415 AAACGACG PPDB Motif PLACE Motif