PlantPromoterDB promoter information of AT5G59870
Summary of Gene (AT5G59870)
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Overview
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Focused view (chromosome 5: 24117144-24115945)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G59870 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G59870
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 59 | - | 24116213 | -69 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 24116213 | -69 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTATAAATA | - | 24116241 | 24116250 | -97 | -106 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCAACGG | - | 24116285 | 24116293 | -141 | -149 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | TCACGCGG | - | 24116332 | 24116339 | -188 | -195 | |||
| AtREG502 | TCACGCGG | Drought | PPDB Motif | PLACE Motif | |||||
| REG | CGCCGTTT | - | 24116377 | 24116384 | -233 | -240 | |||
| AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||