PlantPromoterDB promoter information of AT5G60360
Summary of Gene (AT5G60360)
|
Overview
|
Focused view (chromosome 5: 24279044-24280243)
|
Genome position
from initiation codon AT5G60360.1 AT5G60360.2 AT5G60360.3 TSS from cDNA TSS information AT5G60360 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G60360
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 146 | + | 24279965 | -79 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 24279930 | -114 |
| TSS clone | T | clone | + | 24279948 | -96 |
| TSS clone | A | clone | + | 24279961 | -83 |
| TSS clone | C | clone | + | 24279962 | -82 |
| TSS clone | A | clone | + | 24279965 | -79 |
| TSS clone | C | clone | + | 24279966 | -78 |
| TSS clone | A | clone | + | 24279968 | -76 |
| TSS clone | A | clone | + | 24279972 | -72 |
| TSS clone | T | clone | + | 24279973 | -71 |
| TSS clone | G | clone | + | 24279975 | -69 |
| TSS clone | G | clone | + | 24279977 | -67 |
| TSS clone | C | clone | + | 24279978 | -66 |
| TSS clone | C | clone | + | 24279986 | -58 |
| TSS clone | G | clone | + | 24279988 | -56 |
| TSS clone | A | clone | + | 24279989 | -55 |
| TSS clone | A | clone | + | 24280000 | -44 |
| TSS clone | G | clone | + | 24280021 | -23 |
| TSS clone | A | clone | + | 24280024 | -20 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCTTCCGTCTTCT | + | 24279916 | 24279934 | -128 | -110 |
| Y Patch | CTCTTCTTCTTCTTCTTCTTCTTCC | + | 24279936 | 24279960 | -108 | -84 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCATGGGC | + | 24279750 | 24279757 | -294 | -287 | |||
| AtREG507 | CCATGGGC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| REG | GGACACGTCA | + | 24279834 | 24279843 | -210 | -201 | |||
| AtREG472 | GGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG481 | GACACGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ACCACGTGTCC | + | 24279885 | 24279895 | -159 | -149 | |||
| AtREG544 | ACCACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG472 | ACGTGTCC | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||