PlantPromoterDB promoter information of AT5G62000
Summary of Gene (AT5G62000)
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Overview
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Focused view (chromosome 5: 24909859-24911058)
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Genome position
from initiation codon AT5G62000.2 AT5G62000.3 TSS from cDNA TSS information AT5G62000 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G62000
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | + | 24910419 | -440 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 24910358 | -501 |
| TSS clone | A | clone | + | 24910417 | -442 |
| TSS clone | G | clone | + | 24910420 | -439 |
| TSS clone | A | clone | + | 24910449 | -410 |
| TSS clone | G | clone | + | 24910469 | -390 |
| TSS clone | A | clone | + | 24910470 | -389 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCTTTAT | + | 24910159 | 24910166 | -700 | -693 | |||
| AtREG601 | GGCTTTAT | PPDB Motif | PLACE Motif | ||||||
| REG | TAACCGGT | + | 24910294 | 24910301 | -565 | -558 | |||
| AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | CCGGTTAT | + | 24910307 | 24910314 | -552 | -545 | |||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||