PlantPromoterDB promoter information of AT5G62540.1
Summary of Gene (AT5G62540.1)
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Overview
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Focused view (chromosome 5: 25103679-25104878)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G62540.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G62540.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | + | 25104091 | -588 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 25103934 | -745 |
| TSS clone | T | clone | + | 25103985 | -694 |
| TSS clone | G | clone | + | 25104012 | -667 |
| TSS clone | A | clone | + | 25104091 | -588 |
| TSS clone | G | clone | + | 25104092 | -587 |
| TSS clone | T | clone | + | 25104098 | -581 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTCTATATATAC | + | 25104055 | 25104067 | -624 | -612 |
| Y Patch | TTCTCTCTCCCTCT | + | 25104046 | 25104059 | -633 | -620 |
| Y Patch | TCTCTTTC | + | 25104101 | 25104108 | -578 | -571 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGAACCGA | + | 25103823 | 25103830 | -856 | -849 | |||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||