PlantPromoterDB promoter information of AT5G62690.1
Summary of Gene (AT5G62690.1)
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Overview
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Focused view (chromosome 5: 25180560-25181759)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G62690.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G62690.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 49 | + | 25181477 | -83 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 25181412 | -148 |
| TSS clone | A | clone | + | 25181419 | -141 |
| TSS clone | C | clone | + | 25181420 | -140 |
| TSS clone | G | clone | + | 25181422 | -138 |
| TSS clone | A | clone | + | 25181469 | -91 |
| TSS clone | T | clone | + | 25181470 | -90 |
| TSS clone | T | clone | + | 25181474 | -86 |
| TSS clone | T | clone | + | 25181476 | -84 |
| TSS clone | A | clone | + | 25181478 | -82 |
| TSS clone | A | clone | + | 25181487 | -73 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCTTAT | + | 25181378 | 25181385 | -182 | -175 | |||
| AtREG616 | GCCCTTAT | PPDB Motif | PLACE Motif | ||||||
| REG | TAATTGGG | + | 25181390 | 25181397 | -170 | -163 | |||
| AtREG600 | TAATTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||