Summary of Gene (AT5G62710)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G62710 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 25187303 | -135 |
TSS clone peak | T | clone | + | 25187304 | -134 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 25184374 | AT5G62700.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 25184344 | AT5G62700.1 |
TSS clone | A | clone | + | 25184393 | AT5G62700.1 |
TSS clone | T | clone | + | 25184394 | AT5G62700.1 |
TSS clone | T | clone | + | 25184398 | AT5G62700.1 |
TSS clone | T | clone | + | 25184399 | AT5G62700.1 |
TSS clone | A | clone | + | 25184401 | AT5G62700.1 |
TSS clone | A | clone | + | 25184416 | AT5G62700.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATGGGCCCAAA | + | 25184075 | 25184085 | AT5G62700.1 | ||||
AtREG391 | ATGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG422 | TGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | GGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | TAATTGGG | + | 25184320 | 25184327 | AT5G62700.1 | ||||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   |