PlantPromoterDB promoter information of AT5G63600
Summary of Gene (AT5G63600)
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Overview
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Focused view (chromosome 5: 25463270-25462071)
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Genome position
from initiation codon AT5G63600.2 TSS from cDNA TSS information AT5G63600 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G63600
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 25462426 | -156 |
| TSS peak | A | 89 | - | 25462284 | -14 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 25462439 | -169 |
| TSS clone | T | clone | - | 25462437 | -167 |
| TSS clone | A | clone | - | 25462284 | -14 |
| TSS clone | C | clone | - | 25462283 | -13 |
| TSS clone | C | clone | - | 25462281 | -11 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCTTCTC | - | 25462285 | 25462293 | -15 | -23 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCAATAA | - | 25462438 | 25462445 | -168 | -175 | |||
| AtREG417 | CCCAATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGACCCAC | - | 25462567 | 25462574 | -297 | -304 | |||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | ACGGTTTAT | - | 25462593 | 25462601 | -323 | -331 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||