PlantPromoterDB promoter information of AT5G63640.1

Summary of Gene (AT5G63640.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G63640 TAIR NCBI
Gene model	AT5G63640.1
Description	VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G21380.1); Has 963 Blast hits to 958 proteins in 131 species: Archae - 0; Bacteria - 4; Metazoa - 568; Fungi - 188; Plants - 147; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 25486835-25488034)

`Genome position from initiation codon` `AT5G63670.1 TSS from cDNA TSS information AT5G63640.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G63640.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak T 2 + 25478067 -868

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`T`	2	+	25478067	-868

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCTTC + 25478073 25478082 -862 -853

Y Patch TCTCTCTCCT + 25478102 25478111 -833 -824

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCTTC`	+	25478073	25478082	-862	-853
Y Patch	`TCTCTCTCCT`	+	25478102	25478111	-833	-824
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 30 + 25487994 AT5G63670.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	30	+	25487994	AT5G63670.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 25487981 AT5G63670.1

TSS clone G clone + 25487982 AT5G63670.1

TSS clone T clone + 25487989 AT5G63670.1

TSS clone G clone + 25487991 AT5G63670.1

TSS clone A clone + 25487995 AT5G63670.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	25487981	AT5G63670.1
TSS clone	`G`	clone	+	25487982	AT5G63670.1
TSS clone	`T`	clone	+	25487989	AT5G63670.1
TSS clone	`G`	clone	+	25487991	AT5G63670.1
TSS clone	`A`	clone	+	25487995	AT5G63670.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAGTCAA + 25487833 25487840 AT5G63670.1

AtREG632 AAAGTCAA PPDB Motif PLACE Motif TTGAC

REG TTAAAGCCCATA + 25487893 25487904 AT5G63670.1

AtREG545 TTAAAGCC     PPDB Motif PLACE Motif

AtREG365 TAAAGCCC    PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477     AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TAAAAGCCCAAATACGGCCCAATAA + 25487907 25487931 AT5G63670.1

AtREG549 TAAAAGCC                  PPDB Motif PLACE Motif

AtREG409 AAAAGCCC                 PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA                PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469     AGCCCAAA              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421      GCCCAAAT             PPDB Motif GCCCA PLACE Motif

AtREG499             TACGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG368              ACGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414               CGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352                GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355                 GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417                  CCCAATAA PPDB Motif GCCCA PLACE Motif