PlantPromoterDB promoter information of AT5G63650
Summary of Gene (AT5G63650)
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Overview
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Focused view (chromosome 5: 25476395-25475196)
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Genome position
from initiation codon AT5G63634.1 TSS from cDNA TSS information AT5G63650 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G63650
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | - | 25483584 | -89 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 25483715 | -220 |
| TSS clone | A | clone | - | 25483584 | -89 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTTATAA | - | 25483611 | 25483618 | -116 | -123 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTTGGAT | - | 25483801 | 25483809 | -306 | -314 | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTTCT | - | 25475665 | 25475673 | AT5G63630.1 | |
| Y Patch | CATCTCTCTT | - | 25475712 | 25475721 | AT5G63630.1 | |
| Y Patch | CTCTCTTTC | - | 25475729 | 25475737 | AT5G63630.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAAAGCC | - | 25475860 | 25475867 | AT5G63630.1 | ||||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | TGTCGTTTAACGG | - | 25475907 | 25475919 | AT5G63630.1 | ||||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG565 | GTCGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG610 | TTTAACGG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
| REG | AAAACGACATGCCGTTTT | - | 25475941 | 25475958 | AT5G63630.1 | ||||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||