Summary of Gene (AT5G63650)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G63650 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | - | 25483584 | -89 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 25483715 | -220 |
TSS clone | A | clone | - | 25483584 | -89 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTTATAA | - | 25483611 | 25483618 | -116 | -123 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTGGAT | - | 25483801 | 25483809 | -306 | -314 | |||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCTTCT | - | 25475665 | 25475673 | AT5G63630.1 | |
Y Patch | CATCTCTCTT | - | 25475712 | 25475721 | AT5G63630.1 | |
Y Patch | CTCTCTTTC | - | 25475729 | 25475737 | AT5G63630.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAAAGCC | - | 25475860 | 25475867 | AT5G63630.1 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGTCGTTTAACGG | - | 25475907 | 25475919 | AT5G63630.1 | ||||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG610 | TTTAACGG | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | AAAACGACATGCCGTTTT | - | 25475941 | 25475958 | AT5G63630.1 | ||||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |