PlantPromoterDB promoter information of AT5G63650.1
Summary of Gene (AT5G63650.1)
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Overview
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Focused view (chromosome 5: 25468395-25467196)
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Genome position
from initiation codon AT5G63620.2 TSS from cDNA TSS information AT5G63650.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G63650.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | - | 25483584 | -89 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 25483715 | -220 |
| TSS clone | A | clone | - | 25483584 | -89 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTTATAA | - | 25483611 | 25483618 | -116 | -123 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGTTGGAT | - | 25483801 | 25483809 | -306 | -314 | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 13 | - | 25468388 | AT5G63620.1, AT5G63620.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | - | 25468355 | AT5G63620.1, AT5G63620.2 |
| TSS clone | A | clone | - | 25468353 | AT5G63620.1, AT5G63620.2 |
| TSS clone | A | clone | - | 25468352 | AT5G63620.1, AT5G63620.2 |
| TSS clone | C | clone | - | 25468348 | AT5G63620.1, AT5G63620.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||