Summary of Gene (AT5G63650.1)
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Overview |
Genome position
from initiation codon AT5G63620.2 TSS from cDNA TSS information AT5G63650.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | - | 25483584 | -89 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 25483715 | -220 |
TSS clone | A | clone | - | 25483584 | -89 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTTATAA | - | 25483611 | 25483618 | -116 | -123 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTGGAT | - | 25483801 | 25483809 | -306 | -314 | |||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | - | 25468388 | AT5G63620.1, AT5G63620.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 25468355 | AT5G63620.1, AT5G63620.2 |
TSS clone | A | clone | - | 25468353 | AT5G63620.1, AT5G63620.2 |
TSS clone | A | clone | - | 25468352 | AT5G63620.1, AT5G63620.2 |
TSS clone | C | clone | - | 25468348 | AT5G63620.1, AT5G63620.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CGGCGCGTGAA | - | 25468443 | 25468453 | AT5G63620.1, AT5G63620.2 | ||||
AtREG538 | CGGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | TACACGTGGAT | - | 25468509 | 25468519 | AT5G63620.1, AT5G63620.2 | ||||
AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |