PlantPromoterDB promoter information of AT5G63810.1
Summary of Gene (AT5G63810.1)
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Overview
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Focused view (chromosome 5: 25536242-25537441)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G63810.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G63810.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 25537076 | -166 |
| TSS peak | A | 8 | + | 25537200 | -42 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 25537074 | -168 |
| TSS clone | G | clone | + | 25537075 | -167 |
| TSS clone | G | clone | + | 25537175 | -67 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GATATAAATA | + | 25537041 | 25537050 | -201 | -192 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAGGGTATTT | + | 25536843 | 25536852 | -399 | -390 | |||
| AtREG623 | AAGGGTAT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG567 | AGGGTATT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG602 | GGGTATTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||