PlantPromoterDB promoter information of AT5G64120.1
Summary of Gene (AT5G64120.1)
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Overview
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Focused view (chromosome 5: 25661946-25660747)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G64120.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G64120.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 81 | - | 25661002 | -56 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 25661002 | -56 |
| TSS clone | C | clone | - | 25661001 | -55 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ACTCTATA | - | 25661020 | 25661027 | -74 | -81 |
| TATA Box | CCTCTATAAATA | - | 25661030 | 25661041 | -84 | -95 |
| Y Patch | TCTTCTCT | - | 25660971 | 25660978 | -25 | -32 |
| Y Patch | TCTCCTCT | - | 25661037 | 25661044 | -91 | -98 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCACACGTCAT | - | 25661060 | 25661070 | -114 | -124 | |||
| AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | CCGGTTTT | - | 25661077 | 25661084 | -131 | -138 | |||
| AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GGTGTCGTTTT | - | 25661111 | 25661121 | -165 | -175 | |||
| AtREG599 | GGTGTCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | CACGCGCTT | - | 25661139 | 25661147 | -193 | -201 | |||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | AAAGTCAA | - | 25661182 | 25661189 | -236 | -243 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | TCAAAACG | - | 25661215 | 25661222 | -269 | -276 | |||
| AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | TCAAAACG | - | 25661242 | 25661249 | -296 | -303 | |||
| AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||