PlantPromoterDB promoter information of AT5G64200.2
Summary of Gene (AT5G64200.2)
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Overview
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Focused view (chromosome 5: 25678203-25677004)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G64200.2 5'->3' (-) Promoter sequence AT5G64180.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G64200.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 25683631 | -78 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 25683632 | -79 |
| TSS clone | A | clone | - | 25683631 | -78 |
| TSS clone | T | clone | - | 25683630 | -77 |
| TSS clone | A | clone | - | 25683612 | -59 |
| TSS clone | A | clone | - | 25683611 | -58 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CGTCTCTCTCTC | - | 25683586 | 25683597 | -33 | -44 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCGGTTCG | - | 25683729 | 25683738 | -176 | -185 | |||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 5 | + | 25677083 | AT5G64180.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 25677084 | AT5G64180.1 |
| TSS clone | A | clone | + | 25677096 | AT5G64180.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGGTTAAA | + | 25677031 | 25677038 | AT5G64180.1 | ||||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||