PlantPromoterDB promoter information of AT5G64290.1
Summary of Gene (AT5G64290.1)
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Overview
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Focused view (chromosome 5: 25717642-25716443)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G64290.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G64290.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 44 | - | 25716762 | -120 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 25716779 | -137 |
| TSS clone | G | clone | - | 25716767 | -125 |
| TSS clone | A | clone | - | 25716758 | -116 |
| TSS clone | A | clone | - | 25716750 | -108 |
| TSS clone | T | clone | - | 25716746 | -104 |
| TSS clone | A | clone | - | 25716714 | -72 |
| TSS clone | A | clone | - | 25716691 | -49 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTCGGTTT | - | 25716819 | 25716826 | -177 | -184 | |||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGGTTCGGTTCAA | - | 25716839 | 25716851 | -197 | -209 | |||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTGACTTT | - | 25716927 | 25716934 | -285 | -292 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | ATAAACCGA | - | 25716989 | 25716997 | -347 | -355 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||