PlantPromoterDB promoter information of AT5G64470.1

Summary of Gene (AT5G64470.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G64470 TAIR NCBI
Gene model	AT5G64470.1
Description	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14530.1); Has 703 Blast hits to 692 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 701; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 25775026-25776225)

`Genome position from initiation codon` AT5G64470.2 TSS from cDNA TSS information AT5G64470.1 5'->3' (+) Promoter sequence AT5G64460.1 AT5G64460.2 AT5G64460.3 AT5G64460.4 AT5G64460.5 AT5G64460.6 AT5G64460.7 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G64470.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak G clone + 25776025 -1

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`G`	clone	+	25776025	-1

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	25775568	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone	`C`	clone	-	25775543	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone	`A`	clone	-	25775535	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone	`T`	clone	-	25775528	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone	`G`	clone	-	25775506	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone peak	`G`	clone	-	25775505	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone	`A`	clone	-	25775430	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7
TSS clone	`T`	clone	-	25775429	AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None