Summary of Gene (AT5G64510)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G64510 5'->3' (+) Promoter sequence AT5G64490.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 25784404 | -188 |
TSS clone peak | T | clone | + | 25784405 | -187 |
TSS clone peak | T | clone | + | 25784569 | -23 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 25780497 | AT5G64500.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 25780382 | AT5G64500.1 |
TSS clone | A | clone | + | 25780467 | AT5G64500.1 |
TSS clone | T | clone | + | 25780468 | AT5G64500.1 |
TSS clone | G | clone | + | 25780502 | AT5G64500.1 |
TSS clone peak | A | clone | - | 25780308 | AT5G64490.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCTTCCTC | + | 25780456 | 25780466 | AT5G64500.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CGTGGCTT | + | 25780198 | 25780205 | AT5G64500.1 | ||||
AtREG608 | CGTGGCTT | ABA | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | GACCGACTTA | + | 25780396 | 25780405 | AT5G64500.1 | ||||
AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC, RCCGAC  | |||
AtREG582 | CCGACTTA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  |