PlantPromoterDB promoter information of AT5G64520.3
Summary of Gene (AT5G64520.3)
|
Overview
|
Focused view (chromosome 5: 25774719-25775918)
|
Genome position
from initiation codon TSS from cDNA TSS information AT5G64520.3 5'->3' (+) Promoter sequence AT5G64460.1
AT5G64460.2 AT5G64460.3 AT5G64460.4 AT5G64460.5 AT5G64460.6 AT5G64460.7 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G64520.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 25788035 | -34 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 25775568 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone | C | clone | - | 25775543 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone | A | clone | - | 25775535 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone | T | clone | - | 25775528 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone | G | clone | - | 25775506 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone peak | G | clone | - | 25775505 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone | A | clone | - | 25775430 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
| TSS clone | T | clone | - | 25775429 | AT5G64460.2, AT5G64460.1, AT5G64460.3, AT5G64460.4, AT5G64460.5, AT5G64460.6, AT5G64460.7 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||