PlantPromoterDB promoter information of AT5G64520.3
Summary of Gene (AT5G64520.3)
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Overview
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Focused view (chromosome 5: 25779519-25780718)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G64520.3 5'->3' (+) Promoter sequence AT5G64490.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G64520.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 25788035 | -34 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | + | 25780497 | AT5G64500.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 25780382 | AT5G64500.1 |
| TSS clone | A | clone | + | 25780467 | AT5G64500.1 |
| TSS clone | T | clone | + | 25780468 | AT5G64500.1 |
| TSS clone | G | clone | + | 25780502 | AT5G64500.1 |
| TSS clone peak | A | clone | - | 25780308 | AT5G64490.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTTCCTC | + | 25780456 | 25780466 | AT5G64500.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGTGGCTT | + | 25780198 | 25780205 | AT5G64500.1 | ||||
| AtREG608 | CGTGGCTT | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | GACCGACTTA | + | 25780396 | 25780405 | AT5G64500.1 | ||||
| AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
| AtREG582 | CCGACTTA | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||