PlantPromoterDB promoter information of AT5G65310
Summary of Gene (AT5G65310)
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Overview
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Focused view (chromosome 5: 26105217-26104018)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G65310 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G65310
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 26104663 | -446 |
| TSS peak | A | 26 | - | 26104549 | -332 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 26104614 | -397 |
| TSS clone | T | clone | - | 26104613 | -396 |
| TSS clone | T | clone | - | 26104609 | -392 |
| TSS clone | A | clone | - | 26104598 | -381 |
| TSS clone | C | clone | - | 26104256 | -39 |
| TSS clone | T | clone | - | 26103911 | 306 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCTT | - | 26104572 | 26104581 | -355 | -364 |
| Y Patch | TCTCTCTCCCTCTCT | - | 26104583 | 26104597 | -366 | -380 |
| Y Patch | CTTCCTCT | - | 26104664 | 26104671 | -447 | -454 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCTAGGGT | - | 26104659 | 26104666 | -442 | -449 | |||
| AtREG658 | TCTAGGGT | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | GTAAACCGGT | - | 26104766 | 26104775 | -549 | -558 | |||
| AtREG519 | GTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||