PlantPromoterDB promoter information of AT5G65430
Summary of Gene (AT5G65430)
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Overview
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Focused view (chromosome 5: 26151255-26150056)
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Genome position
from initiation codon AT5G65430.2 TSS from cDNA TSS information AT5G65430 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G65430
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 161 | - | 26150321 | -66 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 26150341 | -86 |
| TSS clone | A | clone | - | 26150321 | -66 |
| TSS clone | G | clone | - | 26150320 | -65 |
| TSS clone | A | clone | - | 26150319 | -64 |
| TSS clone | T | clone | - | 26150316 | -61 |
| TSS clone | T | clone | - | 26150315 | -60 |
| TSS clone | C | clone | - | 26150312 | -57 |
| TSS clone | T | clone | - | 26150311 | -56 |
| TSS clone | A | clone | - | 26150307 | -52 |
| TSS clone | A | clone | - | 26150288 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCCTCC | - | 26150309 | 26150316 | -54 | -61 |
| Y Patch | TTCTTCTTCTC | - | 26150340 | 26150350 | -85 | -95 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCACGCGCGAG | - | 26150403 | 26150413 | -148 | -158 | |||
| AtREG395 | TCACGCGC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG512 | CGCGCGAG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | AACGACGTCGTTTA | - | 26150428 | 26150441 | -173 | -186 | |||
| AtREG493 | AACGACGTCGTT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG431 | ACGACGTCGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG565 | GTCGTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | CACGCGCC | - | 26150488 | 26150495 | -233 | -240 | |||
| AtREG486 | CACGCGCC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | AAACCGAA | - | 26150503 | 26150510 | -248 | -255 | |||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAAGCCC | - | 26150602 | 26150609 | -347 | -354 | |||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||