Summary of Gene (AT5G65660)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G65660 5'->3' (-) Promoter sequence AT5G65640.1
AT5G65640.2 AT5G65650.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 20 | - | 26246375 | -130 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 26246377 | -132 |
TSS clone | T | clone | - | 26246374 | -129 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATAAATA | - | 26246404 | 26246413 | -159 | -168 |
Y Patch | CTCTCTTCTCTTCTCT | - | 26246332 | 26246347 | -87 | -102 |
Y Patch | TCTCTTCTT | - | 26246384 | 26246392 | -139 | -147 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAATGGG | - | 26246573 | 26246580 | -328 | -335 | |||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
REG | AAAGTCAA | - | 26246632 | 26246639 | -387 | -394 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 2 | + | 26239508 | AT5G65650.1 |
TSS peak | A | 2 | + | 26239541 | AT5G65650.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 26239509 | AT5G65650.1 |
TSS clone | A | clone | + | 26239524 | AT5G65650.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTCTTATA | + | 26239469 | 26239476 | AT5G65650.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGAGGCCC | + | 26239367 | 26239374 | AT5G65650.1 | ||||
AtREG411 | AGAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TTATTGGGCCTATA | + | 26239393 | 26239406 | AT5G65650.1 | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG362 | GGGCCTAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG487 | GGCCTATA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAATGGGCTTTAT | + | 26239431 | 26239443 | AT5G65650.1 | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG601 | GGCTTTAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAGCCCAAAC | + | 26239448 | 26239458 | AT5G65650.1 | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG474 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   |