PlantPromoterDB promoter information of AT5G65670.2
Summary of Gene (AT5G65670.2)
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Overview
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Focused view (chromosome 5: 26253463-26254662)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G65670.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G65670.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 40 | + | 26253754 | -709 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 26253685 | -778 |
| TSS clone | A | clone | + | 26253695 | -768 |
| TSS clone | T | clone | + | 26253833 | -630 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTCTCTCTTTCTCT | + | 26253733 | 26253751 | -730 | -712 |
| Y Patch | CTCTTCTTCTCC | + | 26253788 | 26253799 | -675 | -664 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGGTTTAG | + | 26253540 | 26253548 | -923 | -915 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCGTTGGAT | + | 26253574 | 26253582 | -889 | -881 | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||