PlantPromoterDB promoter information of AT5G65720.1
Summary of Gene (AT5G65720.1)
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Overview
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Focused view (chromosome 5: 26295349-26296548)
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Genome position
from initiation codon AT5G65720.2 TSS from cDNA TSS information AT5G65720.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G65720.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | + | 26296273 | -76 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 26296239 | -110 |
| TSS clone | T | clone | + | 26296246 | -103 |
| TSS clone | C | clone | + | 26296253 | -96 |
| TSS clone | C | clone | + | 26296257 | -92 |
| TSS clone | A | clone | + | 26296273 | -76 |
| TSS clone | C | clone | + | 26296274 | -75 |
| TSS clone | G | clone | + | 26296290 | -59 |
| TSS clone | A | clone | + | 26296298 | -51 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCTTCTTC | + | 26296259 | 26296272 | -90 | -77 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TATTGGGC | + | 26296104 | 26296111 | -245 | -238 | |||
| AtREG355 | TATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TATAGGCCCATTAT | + | 26296116 | 26296129 | -233 | -220 | |||
| AtREG487 | TATAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG362 | ATAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG546 | CCCATTAT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||