PlantPromoterDB promoter information of AT5G65750

Summary of Gene (AT5G65750)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G65750 TAIR NCBI
Gene model	AT5G65750
Description	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxoglutarate dehydrogenase, E1 component (InterPro:IPR011603), Dehydrogenase, E1 component (InterPro:IPR001017), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative (TAIR:AT3G55410.1); Has 8716 Blast hits to 8694 proteins in 1114 species: Archae - 2; Bacteria - 2389; Metazoa - 550; Fungi - 187; Plants - 68; Viruses - 0; Other Eukaryotes - 5520 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 26311312-26312511)

`Genome position from initiation codon` `AT5G65770.1 AT5G65770.2 TSS from cDNA TSS information AT5G65750 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G65750

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 10 + 26303736 -476

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	10	+	26303736	-476

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 26303729 -483

TSS clone G clone + 26303730 -482

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	26303729	-483
TSS clone	`G`	clone	+	26303730	-482

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCCTTCTTTCTCT + 26303705 26303721 -507 -491

Y Patch CGTCTTCTTC + 26303772 26303781 -440 -431

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCCTTCTTTCTCT`	+	26303705	26303721	-507	-491
Y Patch	`CGTCTTCTTC`	+	26303772	26303781	-440	-431
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTTTGGGCCGATAAGCCCAATAT + 26303483 26303505 -729 -707

AtREG529 TTTTGGGC                PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414   TTGGGCCG              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG393    TGGGCCGA             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG555     GGGCCGAT            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG462           ATAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG426            TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407             AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402              AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355               GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509                CCCAATAT PPDB Motif PLACE Motif

REG GTTGGGCCTAAAAGCCCAATAT + 26303575 26303596 -637 -616

AtREG449 GTTGGGCC               PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

AtREG356 TTGGGCCT              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358   TGGGCCTA             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360    GGGCCTAA            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG430     GGCCTAAA           PPDB Motif PLACE Motif

AtREG549         TAAAAGCC       PPDB Motif PLACE Motif

AtREG409          AAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376           AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407            AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402             AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355              GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509               CCCAATAT PPDB Motif PLACE Motif

REG TGAGGCCCAGT + 26303611 26303621 -601 -591

AtREG587 TGAGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG447 GAGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410   AGGCCCAG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384    GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTTTGGGCCGATAAGCCCAATAT`		+	26303483	26303505	-729	-707
	AtREG529	`TTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG414	`TTGGGCCG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG393	`TGGGCCGA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG555	`GGGCCGAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG462	`ATAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG426	`TAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG509	`CCCAATAT`		PPDB Motif		PLACE Motif
REG	`GTTGGGCCTAAAAGCCCAATAT`		+	26303575	26303596	-637	-616
	AtREG449	`GTTGGGCC`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG360	`GGGCCTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG430	`GGCCTAAA`		PPDB Motif		PLACE Motif
	AtREG549	`TAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG509	`CCCAATAT`		PPDB Motif		PLACE Motif
REG	`TGAGGCCCAGT`		+	26303611	26303621	-601	-591
	AtREG587	`TGAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG447	`GAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG410	`AGGCCCAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG384	`GGCCCAGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 2 + 26311455 AT5G65770.1, AT5G65770.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	2	+	26311455	AT5G65770.1, AT5G65770.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCTT + 26311469 26311476 AT5G65770.1, AT5G65770.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCTT`	+	26311469	26311476	AT5G65770.1, AT5G65770.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAAAACGCCGTCGTTTGGGC + 26311354 26311373 AT5G65770.1, AT5G65770.2

AtREG564 TAAAACGC             PPDB Motif AAACG(C/G) PLACE Motif

AtREG650 AAAACGCC            PPDB Motif AAACG(C/G) PLACE Motif

AtREG415         CGTCGTTT     PPDB Motif PLACE Motif

AtREG474             GTTTGGGC PPDB Motif GCCCA PLACE Motif