PlantPromoterDB promoter information of AT5G65760.1

Summary of Gene (AT5G65760.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G65760 TAIR NCBI
Gene model	AT5G65760.1
Description	serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase S28 family protein (TAIR:AT2G24280.1); Has 916 Blast hits to 880 proteins in 115 species: Archae - 0; Bacteria - 6; Metazoa - 522; Fungi - 131; Plants - 109; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 26302389-26303588)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G65760.1 5'->3' (+) Promoter sequence AT5G65740.1 AT5G65740.2 AT5G65740.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G65760.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 26308258 -31

TSS clone peak A clone + 26308261 -28

TSS clone A clone + 26308276 -13

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	26308258	-31
TSS clone peak	`A`	clone	+	26308261	-28
TSS clone	`A`	clone	+	26308276	-13

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 26303471 AT5G65740.1, AT5G65740.2, AT5G65740.3

TSS clone peak G clone - 26303433 AT5G65740.1, AT5G65740.2, AT5G65740.3

TSS clone T clone - 26303425 AT5G65740.1, AT5G65740.2, AT5G65740.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	26303471	AT5G65740.1, AT5G65740.2, AT5G65740.3
TSS clone peak	`G`	clone	-	26303433	AT5G65740.1, AT5G65740.2, AT5G65740.3
TSS clone	`T`	clone	-	26303425	AT5G65740.1, AT5G65740.2, AT5G65740.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTTTGGGCCGATAAGCCCAATAT + 26303483 26303505 AT5G65750.1

AtREG529 TTTTGGGC                PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414   TTGGGCCG              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG393    TGGGCCGA             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG555     GGGCCGAT            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG462           ATAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG426            TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407             AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402              AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355               GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509                CCCAATAT PPDB Motif PLACE Motif

REG GTTGGGCCTAAAAGCCCAATA + 26303575 26303595 AT5G65750.1

AtREG449 GTTGGGCC              PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

AtREG356 TTGGGCCT             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358   TGGGCCTA            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360    GGGCCTAA           PPDB Motif GCCCA PLACE Motif GGGCC

AtREG430     GGCCTAAA          PPDB Motif PLACE Motif

AtREG549         TAAAAGCC      PPDB Motif PLACE Motif

AtREG409          AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376           AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407            AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402             AGCCCAAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355              GCCCAATA PPDB Motif GCCCA PLACE Motif