PlantPromoterDB promoter information of AT5G66040

Summary of Gene (AT5G66040)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G66040 TAIR NCBI
Gene model	AT5G66040
Description	SULFURTRANSFERASE PROTEIN 16 (STR16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: SEN1 (SENESCENCE 1) (TAIR:AT4G35770.1); Has 2229 Blast hits to 2226 proteins in 583 species: Archae - 32; Bacteria - 1489; Metazoa - 53; Fungi - 31; Plants - 139; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 26409871-26411070)

`Genome position from initiation codon` `AT5G66040.1 AT5G66040.2 TSS from cDNA TSS information AT5G66040 5'->3' (+) Promoter sequence AT5G66030.1 AT5G66030.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G66040

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 69 + 26410562 -309

TSS peak C 17 + 26410770 -101

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	69	+	26410562	-309
TSS peak	`C`	17	+	26410770	-101

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 26410520 -351

TSS clone T clone + 26410523 -348

TSS clone A clone + 26410530 -341

TSS clone A clone + 26410531 -340

TSS clone A clone + 26410537 -334

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	26410520	-351
TSS clone	`T`	clone	+	26410523	-348
TSS clone	`A`	clone	+	26410530	-341
TSS clone	`A`	clone	+	26410531	-340
TSS clone	`A`	clone	+	26410537	-334

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TGCCGTTTT + 26410364 26410372 -507 -499

AtREG500 TGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG531 GCCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

REG TTAGCCCATAA + 26410415 26410425 -456 -446

AtREG571 TTAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581 TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477   AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG394    GCCCATAA PPDB Motif GCCCA PLACE Motif

REG CTTAGGCCCATTAT + 26410434 26410447 -437 -424

AtREG563 CTTAGGCC       PPDB Motif PLACE Motif

AtREG360 TTAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357      GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546       CCCATTAT PPDB Motif PLACE Motif

REG TATGGCCCAATTA + 26410460 26410472 -411 -399

AtREG479 TATGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG437 ATGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420   TGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352    GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418     GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG600      CCCAATTA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TGCCGTTTT`		+	26410364	26410372	-507	-499
	AtREG500	`TGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG531	`GCCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TTAGCCCATAA`		+	26410415	26410425	-456	-446
	AtREG571	`TTAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG581	`TAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG477	`AGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG394	`GCCCATAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CTTAGGCCCATTAT`		+	26410434	26410447	-437	-424
	AtREG563	`CTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG546	`CCCATTAT`		PPDB Motif		PLACE Motif
REG	`TATGGCCCAATTA`		+	26410460	26410472	-411	-399
	AtREG479	`TATGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG437	`ATGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG600	`CCCAATTA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak C 2 - 26410602 AT5G66030.1, AT5G66030.2

TSS peak A 8 - 26410259 AT5G66030.1, AT5G66030.2

TSS peak G 10 - 26410146 AT5G66030.1, AT5G66030.2

TSS peak T 4 - 26409938 AT5G66030.1, AT5G66030.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`C`	2	-	26410602	AT5G66030.1, AT5G66030.2
TSS peak	`A`	8	-	26410259	AT5G66030.1, AT5G66030.2
TSS peak	`G`	10	-	26410146	AT5G66030.1, AT5G66030.2
TSS peak	`T`	4	-	26409938	AT5G66030.1, AT5G66030.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 26410255 AT5G66030.1, AT5G66030.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	26410255	AT5G66030.1, AT5G66030.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCTCT - 26410098 26410106 AT5G66030.1, AT5G66030.2

Y Patch CCTCTCTCTCTCT - 26410116 26410128 AT5G66030.1, AT5G66030.2

Y Patch CTCTCCTCC - 26410562 26410570 AT5G66030.1, AT5G66030.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCTCT`	-	26410098	26410106	AT5G66030.1, AT5G66030.2
Y Patch	`CCTCTCTCTCTCT`	-	26410116	26410128	AT5G66030.1, AT5G66030.2
Y Patch	`CTCTCCTCC`	-	26410562	26410570	AT5G66030.1, AT5G66030.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GACGACGT - 26410189 26410196 AT5G66030.1, AT5G66030.2

AtREG526 GACGACGT PPDB Motif ACGT PLACE Motif ACGT

REG AAAACGGCA - 26410364 26410372 AT5G66030.1, AT5G66030.2

AtREG531 AAAACGGC PPDB Motif AAACG(C/G) PLACE Motif

AtREG500 AAACGGCA PPDB Motif AAACG(C/G) PLACE Motif

REG TTATGGGCTAA - 26410415 26410425 AT5G66030.1, AT5G66030.2

AtREG394 TTATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG477 TATGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581   ATGGGCTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG571    TGGGCTAA PPDB Motif GCCCA PLACE Motif TGGGCY

REG ATAATGGGCCTAAG - 26410434 26410447 AT5G66030.1, AT5G66030.2

AtREG546 ATAATGGG       PPDB Motif PLACE Motif

AtREG357 TAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358     TGGGCCTA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360      GGGCCTAA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG563       GGCCTAAG PPDB Motif PLACE Motif

REG TAATTGGGCCATA - 26410460 26410472 AT5G66030.1, AT5G66030.2

AtREG600 TAATTGGG      PPDB Motif GCCCA PLACE Motif

AtREG418 AATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420    TTGGGCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG437     TGGGCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG479      GGGCCATA PPDB Motif GCCCA PLACE Motif GGGCC