PlantPromoterDB promoter information of AT5G66190
Summary of Gene (AT5G66190)
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Overview
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Focused view (chromosome 5: 26454012-26452813)
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Genome position
from initiation codon AT5G66190.2 AT5G66200.1 TSS from cDNA TSS information AT5G66190 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G66190
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 26453047 | -35 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 26453176 | -164 |
| TSS clone | G | clone | - | 26453171 | -159 |
| TSS clone | G | clone | - | 26453091 | -79 |
| TSS clone | A | clone | - | 26453090 | -78 |
| TSS clone | T | clone | - | 26453089 | -77 |
| TSS clone | T | clone | - | 26453087 | -75 |
| TSS clone | C | clone | - | 26453075 | -63 |
| TSS clone | T | clone | - | 26453071 | -59 |
| TSS clone | T | clone | - | 26453046 | -34 |
| TSS clone | G | clone | - | 26453043 | -31 |
| TSS clone | A | clone | - | 26453039 | -27 |
| TSS clone | A | clone | - | 26452997 | 15 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCTTCTTCTTCT | - | 26453021 | 26453038 | -9 | -26 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAGTA | - | 26453303 | 26453310 | -291 | -298 | |||
| AtREG434 | GCCCAGTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGAGCCCATTAG | - | 26453314 | 26453325 | -302 | -313 | |||
| AtREG485 | TGAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG558 | CCCATTAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGAGGCCCATCA | - | 26453335 | 26453346 | -323 | -334 | |||
| AtREG411 | AGAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG447 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG403 | GGCCCATC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG635 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||