PlantPromoterDB promoter information of AT5G66250

Summary of Gene (AT5G66250)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G66250 TAIR NCBI
Gene model	AT5G66250
Description	kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 2976 Blast hits to 2536 proteins in 302 species: Archae - 62; Bacteria - 209; Metazoa - 1732; Fungi - 207; Plants - 142; Viruses - 26; Other Eukaryotes - 598 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 26465500-26466699)

`Genome position from initiation codon` `AT5G66240.1 AT5G66240.2 TSS from cDNA TSS information AT5G66250 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G66250

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 26468533 -517

TSS clone peak A clone + 26468548 -502

TSS clone A clone + 26468549 -501

TSS clone T clone + 26468559 -491

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	26468533	-517
TSS clone peak	`A`	clone	+	26468548	-502
TSS clone	`A`	clone	+	26468549	-501
TSS clone	`T`	clone	+	26468559	-491

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 5 + 26466204 AT5G66240.1, AT5G66240.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	5	+	26466204	AT5G66240.1, AT5G66240.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 26466204 AT5G66240.1, AT5G66240.2

TSS clone C clone + 26466209 AT5G66240.1, AT5G66240.2

TSS clone G clone + 26466210 AT5G66240.1, AT5G66240.2

TSS clone T clone + 26466220 AT5G66240.1, AT5G66240.2

TSS clone T clone + 26466236 AT5G66240.1, AT5G66240.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	26466204	AT5G66240.1, AT5G66240.2
TSS clone	`C`	clone	+	26466209	AT5G66240.1, AT5G66240.2
TSS clone	`G`	clone	+	26466210	AT5G66240.1, AT5G66240.2
TSS clone	`T`	clone	+	26466220	AT5G66240.1, AT5G66240.2
TSS clone	`T`	clone	+	26466236	AT5G66240.1, AT5G66240.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAGTCAA + 26466053 26466060 AT5G66240.1, AT5G66240.2

AtREG632 AAAGTCAA PPDB Motif PLACE Motif TTGAC

REG ATTTGGGCCCATAT + 26466111 26466124 AT5G66240.1, AT5G66240.2

AtREG421 ATTTGGGC       PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC      PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392   TTGGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG422    TGGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391     GGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364      GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG432       GCCCATAT PPDB Motif GCCCA PLACE Motif

REG TAAAAGCCCATA + 26466126 26466137 AT5G66240.1, AT5G66240.2

AtREG549 TAAAAGCC     PPDB Motif PLACE Motif

AtREG409 AAAAGCCC    PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477     AGCCCATA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TTGGCCCACA + 26466147 26466156 AT5G66240.1, AT5G66240.2

AtREG484 TTGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG612   GGCCCACA DREB1Aox PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY